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Blebbisomes are large, organelle-rich extracellular vesicles with cell-like properties

Dennis K Jeppesen 1,✉,#Zachary C Sanchez 2,#Noah M Kelley 2James B Hayes 2Jessica Ambroise 2Emma N Koory 2Evan Krystofiak 2Nilay Taneja 2Qin Zhang 1Matthew M Dungan 3Olivia L Perkins 2Matthew J Tyska 2Ela W Knapik 1,2Kevin M Dean 4Amanda C Doran 3Robert J Coffey 1,2Dylan T Burnette 2,


10.1038/s41556-025-01621-0

Posted: Feb 21, 2025


Abstract

Cells secrete a large variety of extracellular vesicles (EVs) to engage in cell-to-cell and cell-to-environment intercellular communication. EVs are functionally involved in many physiological and pathological processes by interacting with cells that facilitate transfer of proteins, lipids and genetic information. However, our knowledge of EVs is incomplete. Here we show that cells actively release exceptionally large (up to 20 µm) membrane-enclosed vesicles that exhibit active blebbing behavior, and we, therefore, have termed them blebbisomes. Blebbisomes contain an array of cellular organelles that include functional mitochondria and multivesicular endosomes, yet lack a definable nucleus. We show that blebbisomes can both secrete and internalize exosomes and microvesicles. Blebbisomes are released from normal and cancer cells, can be observed by direct imaging of cancer cells in vivo and are present in normal bone marrow. We demonstrate that cancer-derived blebbisomes contain a plethora of inhibitory immune checkpoint proteins, including PD-L1, PD-L2, B7-H3, VISTA, PVR and HLA-E. These data identify a very large, organelle-containing functional EV that act as cell-autonomous mobile communication centres capable of integrating and responding to signals in the extracellular environment.

For immunofluorescence experiments, we used the following primary antibodies: monoclonal mouse anti-APEX nuclease I (NeoBiotechnologies, 328-MSM1-P0), monoclonal mouse anti-Cytokeratin 18 (Proteintech, 66187-1-Ig), polyclonal rabbit anti-TUFM (Proteintech, 26730-1-AP), polyclonal rabbit anti-NMIIB (BioLegend, 909902), polyclonal mouse anti-TOM20 (Proteintech, 11802-1-AP), polyclonal rabbit anti-RPS8 (Proteintech, 18228-1-AP), polyclonal rabbit anti-PEX14 (Proteintech, 10594-1-AP), monoclonal mouse anti-GM130 (BD Biosciences, 610822), polyclonal rabbit anti-NMIIA (BioLegend, PRB-440P) and monoclonal rabbit anti-RPS10 (Abcam, ab151550). Additional antibodies included monoclonal mouse anti-mitochondria (Abcam, ab92824), monoclonal rabbit anti-HSP60 (Cell Signaling Technology, 12165) and antibodies against various intracellular proteins, such as annexin A1, annexin A2, syntenin and VDAC2 (all from Abcam: ab214486, ab178677, ab133267 and ab155803, respectively).

  • In Stock

    APEX Nuclease I Antibody [CPTC-APEX1-2]

    $249.00$539.00
    Catalog Number:
    328-MSM1
    Gene:
    APEX1
    Application:
    Flow Cytometry, Immunofluorescence, Immunohistochemistry, Western Blot
    Reactivity:
    Human
    Host:
    Mouse
    Isotype:
    IgG1


Publication History:
Nat Cell Biol. 2025 Feb 21;27(3):438–448. doi: 10.1038/s41556-025-01621-0

Footnotes:
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

These authors contributed equally: Dennis K. Jeppesen, Zachary C. Sanchez.

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